Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1401
Gene Symbol: CRP
CRP
0.100 Biomarker group BEFREE <b>Background and aims:</b> A multicentre, retrospective, non-interventional, patient chart review study was conducted to investigate deep (DR) and histological remission rates during maintenance therapy with biological agents in inflammatory bowel disease (IBD).<b>Methods:</b> We reviewed clinical, endoscopic, and histological findings, and laboratory markers such as C-reactive protein (CRP) and faecal calprotectin (FC) on average of nine years after the initiation of anti-TNF-therapy. 31841064 2020
Entrez Id: 114548
Gene Symbol: NLRP3
NLRP3
0.100 Biomarker group BEFREE Consequently, a variety of researches have focused on exploring new therapies, and found that natural products (NPs) that isolated from herbs or plants may serve as promising therapeutic agents for IBD through anti-inflammatory, anti-oxidant, anti-fibrotic and anti-apoptotic effects, which implicates the modulation on nucleotide-binding domain (NOD) like receptor protein (NLRP) 3 inflammasome, gut microbiota, intestinal microvascular endothelial cells, intestinal epithelia, immune system, etc. 31840596 2019
Entrez Id: 134864
Gene Symbol: TAAR1
TAAR1
0.010 Biomarker group BEFREE Similarly, we discuss localization of TAAR1 expression in the gut, novel findings that TAAR1 may be implicated in inflammatory bowel diseases, and the reported comorbidities of neuropsychiatric disorders and gastrointestinal disorders. 31836967 2020
Entrez Id: 410
Gene Symbol: ARSA
ARSA
0.100 GeneticVariation group BEFREE Drug regimens applied in the year before index hospitalization were as follows: no IBD drugs (43.6% ulcerative colitis, 43.1% Crohn's disease); 5-ASA (45.7% ulcerative colitis, 19.1% Crohn's disease); local steroids (17.9% ulcerative colitis, 17.6% Crohn's disease); systemic steroids (38.6% ulcerative colitis, 29.4% Crohn's disease); immunomodulators (10.7% ulcerative colitis, 18.1% Crohn's disease); biologics (10% ulcerative colitis, 24% Crohn's disease); and calcineurin inhibitors (2.1% ulcerative colitis, 1.5% Crohn's disease). 31834046 2020
Entrez Id: 27034
Gene Symbol: ACAD8
ACAD8
0.100 Biomarker group BEFREE In addition, patients with VEO-IBD have a higher incidence of inflammatory bowel disease unclassified (IBD-U) as compared with older-onset IBD. 31833544 2019
Entrez Id: 100506115
Gene Symbol: SMIM25
SMIM25
0.020 AlteredExpression group BEFREE We focused on LINC01272, a lncRNA upregulated in unstable plaque previously detected in inflammatory bowel disease, which we termed PELATON (plaque enriched lncRNA in atherosclerotic and inflammatory bowel macrophage regulation). 31826651 2020
Entrez Id: 57337
Gene Symbol: SENP7
SENP7
0.010 Biomarker group BEFREE Strong statistical correlations between upregulated SENP7 and high clinical disease indices were observed in IBD patients. 31825833 2019
Entrez Id: 3586
Gene Symbol: IL10
IL10
0.700 Biomarker group BEFREE These results identify a regulatory interaction between IL-10 and PGE2, dysregulation of which may drive aberrant Mφ activation and impaired host defense contributing to IBD pathogenesis. 31819956 2020
Entrez Id: 3588
Gene Symbol: IL10RB
IL10RB
0.360 GeneticVariation group BEFREE Induced pluripotent stem cells (iPSCs) were generated from an infantile-onset IBD patient lacking a functional IL10RB gene. 31819956 2020
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.600 Biomarker group BEFREE Anti-TNF-<i>α</i> Monoclonal Antibody Therapy Improves Anemia through Downregulating Hepatocyte Hepcidin Expression in Inflammatory Bowel Disease. 31814801 2019
Entrez Id: 57817
Gene Symbol: HAMP
HAMP
0.080 AlteredExpression group BEFREE Therefore, our data suggest that TNF-<i>α</i> stimulates the expression of hepcidin in IBD patients, resulting in aggravated anemia and that blockage of TNF-<i>α</i> or the caspase-3/8 and NF-<i>κ</i>B pathways could downregulate hepcidin expression. 31814801 2019
Entrez Id: 79068
Gene Symbol: FTO
FTO
0.110 GeneticVariation group BEFREE To clarify the role of FTO variants in a multiethnic Asian IBD cohort, we recruited 149 patients on thiopurine-based therapy and genotyped two FTO variants rs79206939" genes_norm="79068">p.Ala134Thr (rs79206939) and rs16952570 T > C using Sanger sequencing. 31813937 2019
Entrez Id: 7100
Gene Symbol: TLR5
TLR5
0.070 Biomarker group BEFREE Cellular stress enhances TLR5 responses in IECs, leading to increased DC activation, indicating a previously unknown mechanistic link between epithelial ER stress and immune activation in IBD. 31796949 2019
Entrez Id: 4323
Gene Symbol: MMP14
MMP14
0.020 Biomarker group BEFREE Our results identify MT1-MMP as a new actor in inflammatory IA and a promising therapeutic target for inflammatory bowel disease. 31793743 2020
Entrez Id: 11252
Gene Symbol: PACSIN2
PACSIN2
0.010 GeneticVariation group BEFREE The aim of the study was to validate the impact of the single-nucleotide polymorphism rs2413739 (T > C) in the PACSIN2 gene on thiopurines pharmacological parameters and clinical response in an Italian cohort of pediatric patients with acute lymphoblastic leukemia (ALL) and inflammatory bowel disease (IBD). 31792371 2019
Entrez Id: 114548
Gene Symbol: NLRP3
NLRP3
0.100 AlteredExpression group BEFREE NEK7 mRNA and protein expression and pyroptosis-associated factors, including Caspase-1 (p45, p20), NLRP3, and GSDMD, were upregulated in IBD tissues. 31787755 2019
Entrez Id: 834
Gene Symbol: CASP1
CASP1
0.030 AlteredExpression group BEFREE NEK7 mRNA and protein expression and pyroptosis-associated factors, including Caspase-1 (p45, p20), NLRP3, and GSDMD, were upregulated in IBD tissues. 31787755 2019
Entrez Id: 79792
Gene Symbol: GSDMD
GSDMD
0.010 AlteredExpression group BEFREE NEK7 mRNA and protein expression and pyroptosis-associated factors, including Caspase-1 (p45, p20), NLRP3, and GSDMD, were upregulated in IBD tissues. 31787755 2019
Entrez Id: 140609
Gene Symbol: NEK7
NEK7
0.010 AlteredExpression group BEFREE NEK7 mRNA and protein expression and pyroptosis-associated factors, including Caspase-1 (p45, p20), NLRP3, and GSDMD, were upregulated in IBD tissues. 31787755 2019
Entrez Id: 7040
Gene Symbol: TGFB1
TGFB1
0.400 Biomarker group BEFREE Correction to: TGF-beta1 gene-modified, immature dendritic cells delay the development of inflammatory bowel disease by inducing CD4(+)Foxp3(+) regulatory T cells. 31784682 2020
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.100 Biomarker group BEFREE Correction to: TGF-beta1 gene-modified, immature dendritic cells delay the development of inflammatory bowel disease by inducing CD4(+)Foxp3(+) regulatory T cells. 31784682 2020
Entrez Id: 123263
Gene Symbol: MTFMT
MTFMT
0.050 Biomarker group BEFREE Faecal microbiota transplant (FMT) targets inflammatory bowel disease (IBD) by modifying intestinal dysbiosis. 31784432 2019
Entrez Id: 3952
Gene Symbol: LEP
LEP
0.070 Biomarker group BEFREE The involvement of altered adipocyte function and the deregulated production of adipokines, such as leptin and adiponectin, has been suggested in pathogenesis of IBD. 31779136 2019
Entrez Id: 9370
Gene Symbol: ADIPOQ
ADIPOQ
0.040 Biomarker group BEFREE The involvement of altered adipocyte function and the deregulated production of adipokines, such as leptin and adiponectin, has been suggested in pathogenesis of IBD. 31779136 2019
Entrez Id: 2152
Gene Symbol: F3
F3
0.020 Biomarker group BEFREE Here we evaluate TF expression in an inflammatory bowel disease (IBD) cohort, with special focus on differences between UC and PSC-UC patients.<b>Materials and methods:</b> Colonic biopsies from UC (<i>n</i> = 23), PSC (<i>n</i> = 24), and healthy controls (<i>n</i> = 11) were stained for TF by immunohistochemistry. 31774347 2019